PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00157028001
Common NameGSBRNA2T00157028001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 131aa    MW: 14741 Da    PI: 8.2113
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00157028001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26076.45.1e-24391241498
               DUF260  14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                          ++Cv+apyfp+++p kf  vhk+FG++nv k+l++l ++ + e a+++l+yeAear++dP++G vg  + +++ l++lk e++++ 
  GSBRNA2T00157028001  39 NSCVMAPYFPSKEPDKFDRVHKVFGVENVYKILSRLeEPWQSEYAVNALCYEAEARIHDPIHGYVGPQMIYNNILNNLKREIDSAI 124
                          68**********************************55556899***********************************9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.6925127IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-2339122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MSSLKIKGKP KKKKNGFTNL CCMQLHEQHN GPCTLGSGNS CVMAPYFPSK EPDKFDRVHK  60
VFGVENVYKI LSRLEEPWQS EYAVNALCYE AEARIHDPIH GYVGPQMIYN NILNNLKREI  120
DSAINELAIS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00157028001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595095.13e-62PREDICTED: LOB domain-containing protein 32-like
SwissprotQ9FFL31e-24LBD35_ARATH; LOB domain-containing protein 35
TrEMBLA0A078DY191e-94A0A078DY19_BRANA; BnaC07g37500D protein
STRINGBra019364.1-P5e-43(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.11e-25LOB domain-containing protein 35
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]